MPEG-4 Systems Toolbox: muxe streams into MP4 container. More information: https://gpac.wp.imt.fr/mp4box.
mp4box -info path/to/file
mp4box -add input_subs.srt:lang=eng -add input.mp4 output.mp4
mp4box -add input1.mp4#audio -add input2.mp4#video output.mp4